Together, Zotero and Zotfile allow you to download academic articles, automatically rename them according to a set format, and store them in Dropbox (or some other cloud service) with just a few clicks. I organize articles and their corresponding references using Zotero and Zotfile, following the advice laid out here. The workflows below reflect that preference. In choosing tools, I tend to prefer free, open, and open-source software or one-time purchases over subscription services. These are the tools I wish had found earlier in my graduate student career. Create markdown-backed Kanban boards in Obsidian.I’ve outlined below some of my favorite tools and workflows for researchers. Community plugins list, theme list, and releases of Obsidian. Zotero is a free, easy-to-use tool to help you collect, organize, cite, and share your research sources. Generation of diagrams like flowcharts or sequence diagrams from text in a similar manner as markdown A command line python script to convert Obsidian md files to a pdf Pandoc document export plugin for Obsidian () Rust library and CLI to export an Obsidian vault to regular Markdown □A simple and elegant markdown editor, available for Linux, macOS and Windows. Build your personal knowledge base with Trilium Notes Use it to organize your todo list, to write your journals, or to record your unique life. A local-first, non-linear, outliner notebook for organizing and sharing your personal knowledge base. When comparing markdown-preview-enhanced and Zettlr you can also consider the following projects: In which case, all you really need is Markdown Preview Enhanced and the file system. Dendron makes it seem like it is for keeping thousands of small notes, but the ways in which you can view, organize, and navigate between notes (lack of good "browse," search, links, lists, seeing multiple notes, next/previous note, and so on) are so limited that it makes more sense to write long documents. Should notes be as short as possible? Or stretch into long documents? The ideal tool IMO would blur the difference between an ordered hierarchy of sections within a document and an ordered hierarchy of notes within some grouping. There's a tension in any note-taking tool between short notes and long notes. Clicking links to go from one note to another doesn't work very well.ģ) Poor full-text search (just VS Code's code search).Ĥ) You can't specify an order for notes, only unordered hierarchy, and you can't easily view multiple notes at once, which means keeping lots of short notes, or using different notes for different sections of a document, doesn't really work. Opening a note behaves differently depending on which tab is focused. Each note has a tab for editing it and a tab for viewing/previewing it. It's a cool thought that I could create a nice website of documentation or notes without leaving VS Code.Ģ) Major warts in navigating between notes. When my data is plain text on my local disk, I own it I know I can export it, I can run whatever editor or program on it I can access past versions (via git or Dropbox) I don't have to worry about it being corrupted, or accidentally deleting some of it, or not being able to access it because of server issues, or not being able to export it, or being offline, and so on.Ĥ) The Dendron docs ("wiki") site is created using Dendron. if you use Notion, say, your data materializes out of "the cloud" when you launch the app, and otherwise has no tangible existence). I still use it, separately from Dendron.ģ) Storing my data as plain text on disk (backed up by GitHub or Dropbox) has nice properties compared to how SaaS apps do it (e.g. For example, check out all the diagram types it supports. I was excited at first, but overall the cons outweighed the pros for me.ġ) There's a simplicity in using VS Code for writing notes and docs if (and probably only if) you already spend your day in VS Code, like I do.Ģ) The Markdown Preview Enhanced VS Code extension (which is a dependency of Dendron) is super cool for having so many "batteries" included. I tried out Dendron a few months ago for personal note-taking, technical docs, and organizing tasks.
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